bnbc

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see bnbc.

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: 3.14

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at gmail.com>

Citation (from within R, enter citation("bnbc")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("bnbc")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bnbc")

bnbc User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Version 1.16.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License Artistic-2.0

Imports Rcpp (>= 0.12.12), IRanges, rhdf5, data.table, GenomeInfoDb, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils

System Requirements

Suggests BiocStyle, knitr, rmarkdown, RUnit

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package bnbc_1.16.0.tar.gz

Windows Binary bnbc_1.16.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) bnbc_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/bnbc

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bnbc

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Old Source Packages for BioC 3.14 Source Archive