biodbChebi

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see biodbChebi.

biodbChebi, a library for connecting to the ChEBI Database

Bioconductor version: 3.14

The biodbChebi library provides access to the ChEBI Database, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name, mass or other fields.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbChebi")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biodbChebi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbChebi")

Introduction to the biodbChebi package. HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Infrastructure, Software

Version 1.0.1

In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)

License AGPL-3

Depends R (>= 4.1)

Imports R6, biodb(>= 1.1.5)

System Requirements

URL https://github.com/pkrog/biodbChebi

Bug Reports https://github.com/pkrog/biodbChebi/issues

Suggests BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbChebi_1.0.1.tar.gz

Windows Binary biodbChebi_1.0.1.zip

macOS 10.13 (High Sierra) biodbChebi_1.0.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/biodbChebi

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbChebi

Bioc Package Browser https://code.bioconductor.org/browse/biodbChebi/

Package Short Url https://bioconductor.org/packages/biodbChebi/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive