biobtreeR

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see biobtreeR.

Using biobtree tool from R

Bioconductor version: 3.14

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Citation (from within R, enter citation("biobtreeR")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")

The biobtreeR users guide HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Software

Version 1.6.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License MIT + file LICENSE

Depends

Imports httr, httpuv, stringi, jsonlite, methods, utils

System Requirements

URL https://github.com/tamerh/biobtreeR

Bug Reports https://github.com/tamerh/biobtreeR/issues

Suggests BiocStyle, knitr, testthat, rmarkdown, markdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biobtreeR_1.6.0.tar.gz

Windows Binary biobtreeR_1.6.0.zip

macOS 10.13 (High Sierra) biobtreeR_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/biobtreeR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biobtreeR

Bioc Package Browser https://code.bioconductor.org/browse/biobtreeR/

Package Short Url https://bioconductor.org/packages/biobtreeR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive