bayNorm

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see bayNorm.

Single-cell RNA sequencing data normalization

Bioconductor version: 3.14

bayNorm is used for normalizing single-cell RNA-seq data.

Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

Maintainer: Wenhao Tang <wt215 at ic.ac.uk>

Citation (from within R, enter citation("bayNorm")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("bayNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bayNorm")

Introduction to bayNorm HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software

Version 1.12.0

In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)

License GPL (>= 2)

Depends R (>= 3.5)

Imports Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils

System Requirements

URL https://github.com/WT215/bayNorm

Bug Reports https://github.com/WT215/bayNorm/issues

Suggests knitr, rmarkdown, BiocStyle, devtools, testthat

Linking To Rcpp, RcppArmadillo, RcppProgress

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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