affyPara

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyPara.

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

DOI: 10.18129/B9.bioc.affyPara

Bioconductor version: 3.14

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

Citation (from within R, enter citation("affyPara")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("affyPara")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, Preprocessing, Software

Version 1.54.0

In Bioconductor since BioC 2.2 (R-2.7) (16 years)

License GPL-3

Depends R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio

Imports

System Requirements

URL http://www.ibe.med.uni-muenchen.de

Suggests affydata

Linking To

Enhances affy

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/affyPara

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affyPara

Package Short Url https://bioconductor.org/packages/affyPara/

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Old Source Packages for BioC 3.14 Source Archive