StarBioTrek

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see StarBioTrek.

StarBioTrek

Bioconductor version: 3.14

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("StarBioTrek")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")

Vignette Title HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneRegulation, KEGG, Network, Pathways, Software

Version 1.20.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License GPL (>= 3)

Depends R (>= 3.3)

Imports SpidermiR, graphite, AnnotationDbi, e1071, ROCR, MLmetrics, grDevices, igraph, reshape2, ggplot2

System Requirements

URL https://github.com/claudiacava/StarBioTrek

Bug Reports https://github.com/claudiacava/StarBioTrek/issues

Suggests BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package StarBioTrek_1.20.0.tar.gz

Windows Binary StarBioTrek_1.20.0.zip

macOS 10.13 (High Sierra) StarBioTrek_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/StarBioTrek

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/StarBioTrek

Bioc Package Browser https://code.bioconductor.org/browse/StarBioTrek/

Package Short Url https://bioconductor.org/packages/StarBioTrek/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive