STRINGdb

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see STRINGdb.

STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis

Bioconductor version: 3.14

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (https://string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, enter citation("STRINGdb")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

STRINGdb Vignette PDF R Script

Reference Manual PDF

biocViews Network, Software

Version 2.6.5

In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)

License GPL-2

Depends R (>= 2.14.0)

Imports png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix

System Requirements

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Suggests RUnit, BiocGenerics

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Follow Installation instructions to use this package in your R session.

Source Package STRINGdb_2.6.5.tar.gz

Windows Binary STRINGdb_2.6.5.zip

macOS 10.13 (High Sierra) STRINGdb_2.6.5.tgz

Source Repository git clone https://git.bioconductor.org/packages/STRINGdb

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STRINGdb

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Old Source Packages for BioC 3.14 Source Archive