RefPlus

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see RefPlus.

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: 3.14

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Citation (from within R, enter citation("RefPlus")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RefPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RefPlus")

RefPlus Manual PDF R Script

Reference Manual PDF

Version 1.64.0

In Bioconductor since BioC 2.0 (R-2.5) (17 years)

License GPL (>= 2)

Depends R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)

Imports

System Requirements

URL

Suggests affydata

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package RefPlus_1.64.0.tar.gz

Windows Binary RefPlus_1.64.0.zip

macOS 10.13 (High Sierra) RefPlus_1.64.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RefPlus

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RefPlus

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive