RTCA

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see RTCA.

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Bioconductor version: 3.14

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

Author: Jitao David Zhang

Maintainer: Jitao David Zhang <davidvonpku at gmail.com>

Citation (from within R, enter citation("RTCA")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RTCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCA")

Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package PDF R Script

RTCAtransformation: Discussion of transformation methods of RTCA data PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, ImmunoOncology, Infrastructure, Software, TimeCourse, Visualization

Version 1.46.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License LGPL-3

Depends methods, stats, graphics, Biobase, RColorBrewer, gtools

Imports

System Requirements

URL http://code.google.com/p/xcelligence/ http://www.xcelligence.roche.com/ http://www.nextbiomotif.com/Home/scientific-programming

Suggests xtable

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCA_1.46.0.tar.gz

Windows Binary RTCA_1.46.0.zip

macOS 10.13 (High Sierra) RTCA_1.46.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RTCA

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCA

Bioc Package Browser https://code.bioconductor.org/browse/RTCA/

Package Short Url https://bioconductor.org/packages/RTCA/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive