ROTS

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ROTS.

Reproducibility-Optimized Test Statistic

Bioconductor version: 3.14

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Tomi Suomi <tomi.suomi at utu.fi>

Citation (from within R, enter citation("ROTS")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ROTS")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")

ROTS: Reproducibility Optimized Test Statistic PDF R Script

Reference Manual PDF

NEWS Text

Version 1.22.0

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL (>= 2)

Depends R (>= 3.3)

Imports Rcpp, stats, Biobase, methods

System Requirements

URL

Suggests testthat

Linking To Rcpp

Enhances

Depends On Me

Imports Me PECA

Suggests Me wrProteo

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package ROTS_1.22.0.tar.gz

Windows Binary ROTS_1.22.0.zip

macOS 10.13 (High Sierra) ROTS_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ROTS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ROTS

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Old Source Packages for BioC 3.14 Source Archive