RCyjs

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

Bioconductor version: 3.14

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js HTML R Script

Reference Manual PDF

README Text

NEWS Text

LICENSE Text

Version 2.16.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License MIT + file LICENSE

Depends R (>= 3.5.0), BrowserViz(>= 2.7.18), graph(>= 1.56.0)

Imports methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils

System Requirements

URL

Suggests RUnit, BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

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Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package RCyjs_2.16.0.tar.gz

Windows Binary RCyjs_2.16.0.zip

macOS 10.13 (High Sierra) RCyjs_2.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RCyjs

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RCyjs

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Old Source Packages for BioC 3.14 Source Archive