PAIRADISE

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see PAIRADISE.

PAIRADISE: Paired analysis of differential isoform expression

Bioconductor version: 3.14

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Citation (from within R, enter citation("PAIRADISE")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PAIRADISE")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")

PAIRADISE HTML R Script

Reference Manual PDF

LICENSE Text

Version 1.10.0

In Bioconductor since BioC 3.9 (R-3.6) (5 years)

License MIT + file LICENSE

Depends R (>= 3.6), nloptr

Imports SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel

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Suggests testthat, knitr, rmarkdown, BiocStyle

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Follow Installation instructions to use this package in your R session.

Windows Binary PAIRADISE_1.10.0.zip

macOS 10.13 (High Sierra) PAIRADISE_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/PAIRADISE

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PAIRADISE

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Old Source Packages for BioC 3.14 Source Archive