Onassis

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Onassis.

OnASSIs Ontology Annotation and Semantic SImilarity software

DOI: 10.18129/B9.bioc.Onassis

Bioconductor version: 3.14

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.

Author: Eugenia Galeota

Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Citation (from within R, enter citation("Onassis")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Onassis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Clustering, DataImport, GeneTarget, Network, Software

Version 1.15.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License GPL-2

Depends R (>= 4.0), rJava, OnassisJavaLibs

Imports GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr, Rtsne, dendextend, clusteval, ggplot2, ggfortify

System Requirements Java (>= 1.8)

URL

Suggests BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary Onassis_1.15.0.zip

macOS 10.13 (High Sierra) Onassis_1.15.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Onassis

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Onassis

Bioc Package Browser https://code.bioconductor.org/browse/Onassis/

Package Short Url https://bioconductor.org/packages/Onassis/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive