OPWeight

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see OPWeight.

Optimal p-value weighting with independent information

Bioconductor version: 3.14

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("OPWeight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OPWeight")

Introduction to OPWeight HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software

Version 1.16.0

In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)

License Artistic-2.0

Depends R (>= 3.4.0)

Imports graphics, qvalue, MASS, tibble, stats

System Requirements

URL https://github.com/mshasan/OPWeight

Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat

Linking To

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OPWeight_1.16.0.tar.gz

Windows Binary OPWeight_1.16.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) OPWeight_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/OPWeight

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OPWeight

Bioc Package Browser https://code.bioconductor.org/browse/OPWeight/

Package Short Url https://bioconductor.org/packages/OPWeight/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive