NCIgraph

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see NCIgraph.

Pathways from the NCI Pathways Database

Bioconductor version: 3.14

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Citation (from within R, enter citation("NCIgraph")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("NCIgraph")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")

NCIgraph: networks from the NCI pathway integrated database as graphNEL objects. PDF R Script

Reference Manual PDF

Version 1.42.0

In Bioconductor since BioC 2.8 (R-2.13) (13 years)

License GPL-3

Depends R (>= 2.10.0)

Imports graph, KEGGgraph, methods, RBGL, RCy3, R.methodsS3

System Requirements

URL

Suggests Rgraphviz

Linking To

Enhances DEGraph

Depends On Me

Imports Me DEGraph

Suggests Me DEGraph

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package NCIgraph_1.42.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/NCIgraph

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NCIgraph

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Old Source Packages for BioC 3.14 Source Archive