MotifDb

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MotifDb.

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MotifDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

Details

See More

Suggests RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR, markdown

Linking To

Enhances

Depends On Me generegulation, motifbreakR, trena

Imports Me igvR, rTRMui

Suggests Me ATACseqQC, DiffLogo, enhancerHomologSearch, memes, MMDiff2, motifcounter, motifStack, profileScoreDist, PWMEnrich, rTRM, TFutils, universalmotif, vtpnet

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.