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MatrixRider
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MatrixRider.
Obtain total affinity and occupancies for binding site matrices on a given sequence
Bioconductor version: 3.14
Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
citation("MatrixRider")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MatrixRider")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MatrixRider")
Details
Package Archives
Follow Installation instructions to use this package in your R session.