MEAT

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MEAT.

Muscle Epigenetic Age Test

Bioconductor version: 3.14

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] , Steve Horvath [ctb]

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Citation (from within R, enter citation("MEAT")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEAT")

MEAT HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software

Version 1.6.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License MIT + file LICENSE

Depends R (>= 4.0)

Imports impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon

System Requirements

URL https://github.com/sarah-voisin/MEAT

Bug Reports https://github.com/sarah-voisin/MEAT/issues

Suggests knitr, markdown, rmarkdown, BiocStyle, testthat (>= 2.1.0)

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