MACSr

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MACSr.

MACS: Model-based Analysis for ChIP-Seq

Bioconductor version: 3.14

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Author: Qiang Hu [aut, cre]

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>

Citation (from within R, enter citation("MACSr")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MACSr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSr")

MACSr HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ATACSeq, ChIPSeq, ImmunoOncology, Software

Version 1.2.0

In Bioconductor since BioC 3.13 (R-4.1) (3 years)

License BSD_3_clause + file LICENSE

Depends R (>= 4.1.0)

Imports utils, reticulate, S4Vectors, methods, basilisk, ExperimentHub, AnnotationHub

System Requirements

URL

Suggests testthat, knitr, rmarkdown, BiocStyle, MACSdata

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSr_1.2.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra) MACSr_1.2.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MACSr

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSr

Bioc Package Browser https://code.bioconductor.org/browse/MACSr/

Package Short Url https://bioconductor.org/packages/MACSr/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive