GWAS.BAYES

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see GWAS.BAYES.

GWAS for Selfing Species

Bioconductor version: 3.14

This package is built to perform GWAS analysis for selfing species. The research related to this package was supported in part by National Science Foundation Award 1853549.

Author: Jake Williams [aut, cre], Marco Ferreira [aut], Tieming Ji [aut]

Maintainer: Jake Williams <jwilliams at vt.edu>

Citation (from within R, enter citation("GWAS.BAYES")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GWAS.BAYES")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GWAS.BAYES")

GWAS.BAYES HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AssayDomain, SNP, Software

Version 1.4.0

In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)

License GPL-2 | GPL-3

Depends R (>= 4.0), Rcpp (>= 1.0.3), RcppEigen (>= 0.3.3.7.0), GA (>= 3.2), caret (>= 6.0-86), ggplot2 (>= 3.3.0), doParallel (>= 1.0.15), memoise (>= 1.1.0), reshape2 (>= 1.4.4), Matrix (>= 1.2-18)

Imports

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown, formatR, rrBLUP, qqman

Linking To RcppEigen (>= 0.3.3.7.0), Rcpp (>= 1.0.3)

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GWAS.BAYES_1.4.0.tar.gz

Windows Binary GWAS.BAYES_1.4.0.zip

macOS 10.13 (High Sierra) GWAS.BAYES_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GWAS.BAYES

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GWAS.BAYES

Bioc Package Browser https://code.bioconductor.org/browse/GWAS.BAYES/

Package Short Url https://bioconductor.org/packages/GWAS.BAYES/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive