GSRI

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see GSRI.

Gene Set Regulation Index

Bioconductor version: 3.14

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("GSRI")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GSRI")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")

Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index PDF R Script

Reference Manual PDF

NEWS Text

Version 2.42.0

In Bioconductor since BioC 2.6 (R-2.11) (14 years)

License GPL-3

Depends R (>= 2.14.2), fdrtool

Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)

System Requirements

URL

Suggests limma, hgu95av2.db

Linking To

Enhances parallel

Depends On Me

Imports Me

Suggests Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Source Package GSRI_2.42.0.tar.gz

Windows Binary GSRI_2.42.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) GSRI_2.42.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/GSRI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSRI

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Old Source Packages for BioC 3.14 Source Archive