EnMCB

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see EnMCB.

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Bioconductor version: 3.14

Creation of the correlated blocks using DNA methylation profiles. A stacked ensemble of machine learning models, which combined the cox, support vector machine and elastic-net regression model, can be constructed to predict disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Citation (from within R, enter citation("EnMCB")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")

vignette HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine

Version 1.6.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License GPL-2

Depends R (>= 4.0)

Imports foreach, doParallel, parallel, stats, survivalROC, glmnet, rms, mboost, survivalsvm, ggplot2, IlluminaHumanMethylation450kanno.ilmn12.hg19, minfi, boot, survival, utils

System Requirements

URL

Bug Reports https://github.com/whirlsyu/EnMCB/issues

Suggests SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, prognosticROC, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnMCB_1.6.0.tar.gz

Windows Binary EnMCB_1.6.0.zip

macOS 10.13 (High Sierra) EnMCB_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/EnMCB

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EnMCB

Bioc Package Browser https://code.bioconductor.org/browse/EnMCB/

Package Short Url https://bioconductor.org/packages/EnMCB/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive