CyTOFpower

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see CyTOFpower.

Power analysis for CyTOF experiments

Bioconductor version: 3.14

This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.

Author: Anne-Maud Ferreira [cre, aut] , Catherine Blish [aut], Susan Holmes [aut]

Maintainer: Anne-Maud Ferreira <anne-maud.ferreira at stanford.edu>

Citation (from within R, enter citation("CyTOFpower")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CyTOFpower")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CyTOFpower")

Power analysis for CyTOF experiments HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod

Version 1.0.0

In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)

License LGPL-3

Depends R (>= 4.1)

Imports CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr

System Requirements

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Suggests testthat (>= 3.0.0), BiocStyle, knitr

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CyTOFpower_1.0.0.tar.gz

Windows Binary CyTOFpower_1.0.0.zip

macOS 10.13 (High Sierra) CyTOFpower_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CyTOFpower

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CyTOFpower

Bioc Package Browser https://code.bioconductor.org/browse/CyTOFpower/

Package Short Url https://bioconductor.org/packages/CyTOFpower/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive