ABarray

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ABarray.

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: 3.14

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author: Yongming Andrew Sun

Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>

Citation (from within R, enter citation("ABarray")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ABarray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABarray")

ABarray gene expression PDF

ABarray gene expression GUI interface PDF

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, OneChannel, Preprocessing, Software

Version 1.62.0

In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)

License GPL

Depends

Imports Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils

System Requirements

URL

Suggests limma, LPE

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABarray_1.62.0.tar.gz

Windows Binary ABarray_1.62.0.zip

macOS 10.13 (High Sierra) ABarray_1.62.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ABarray

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABarray

Bioc Package Browser https://code.bioconductor.org/browse/ABarray/

Package Short Url https://bioconductor.org/packages/ABarray/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive