scpdata

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see scpdata.

Single-Cell Proteomics Data Package

Bioconductor version: 3.13

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut, cre] , Laurent Gatto [aut]

Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>

Citation (from within R, enter citation("scpdata")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("scpdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scpdata")

Data Package for Single Cell Proteomics HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, Proteome, ReproducibleResearch, SingleCellData

Version 1.0.0

License GPL-2

Depends R (>= 4.1), QFeatures, ExperimentHub

Imports utils, AnnotationHub, SingleCellExperiment, S4Vectors

System Requirements

URL

Suggests scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scpdata_1.0.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/scpdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scpdata

Package Short Url https://bioconductor.org/packages/scpdata/

Package Downloads Report Download Stats