MethylSeqData

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MethylSeqData.

Collection of Public DNA Methylation Sequencing Datasets

Bioconductor version: 3.13

Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.

Author: Peter Hickey [aut, cre]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("MethylSeqData")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MethylSeqData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeqData")

User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData

Version 1.2.0

License CC0

Depends SummarizedExperiment

Imports ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils

System Requirements

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Suggests BiocFileCache, BiocStyle, data.table, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethylSeqData_1.2.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/MethylSeqData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethylSeqData

Package Short Url https://bioconductor.org/packages/MethylSeqData/

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