tweeDEseq

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: 3.13

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")

tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod

Version 1.38.0

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License GPL (>= 2)

Depends R (>= 2.12.0)

Imports MASS, limma, edgeR, parallel, cqn

System Requirements

URL http://www.creal.cat/jrgonzalez/software.htm

Suggests tweeDEseqCountData, xtable

Linking To

Enhances

Depends On Me

Imports Me ptmixed

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tweeDEseq_1.38.0.tar.gz

Windows Binary tweeDEseq_1.38.0.zip

macOS 10.13 (High Sierra) tweeDEseq_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/tweeDEseq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tweeDEseq

Bioc Package Browser https://code.bioconductor.org/browse/tweeDEseq/

Package Short Url https://bioconductor.org/packages/tweeDEseq/

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Old Source Packages for BioC 3.13 Source Archive