simulatorZ

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see simulatorZ.

Simulator for Collections of Independent Genomic Data Sets

DOI: 10.18129/B9.bioc.simulatorZ

Bioconductor version: 3.13

simulatorZ is a package intended primarily to simulate collections of independent genomic data sets, as well as performing training and validation with predicting algorithms. It supports ExpressionSet and RangedSummarizedExperiment objects.

Author: Yuqing Zhang, Christoph Bernau, Levi Waldron

Maintainer: Yuqing Zhang <zhangyuqing.pkusms at gmail.com>

Citation (from within R, enter citation("simulatorZ")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("simulatorZ")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Software, Survival

Version 1.26.0

In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)

License Artistic-2.0

Depends R (>= 3.5), Biobase, SummarizedExperiment, survival, CoxBoost, BiocGenerics

Imports graphics, stats, gbm, Hmisc, GenomicRanges, methods

System Requirements

URL https://github.com/zhangyuqing/simulatorZ

Bug Reports https://github.com/zhangyuqing/simulatorZ

Suggests RUnit, BiocStyle, curatedOvarianData, parathyroidSE

Linking To

Enhances

Depends On Me

Imports Me

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Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/simulatorZ

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/simulatorZ

Package Short Url https://bioconductor.org/packages/simulatorZ/

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Old Source Packages for BioC 3.13 Source Archive