randRotation

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see randRotation.

Random Rotation Methods for High Dimensional Data with Batch Structure

Bioconductor version: 3.13

A collection of methods for performing random rotations on high-dimensional, normally distributed data (e.g. microarray or RNA-seq data) with batch structure. The random rotation approach allows exact testing of dependent test statistics with linear models following arbitrary batch effect correction methods.

Author: Peter Hettegger [aut, cre]

Maintainer: Peter Hettegger <p.hettegger at gmail.com>

Citation (from within R, enter citation("randRotation")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("randRotation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("randRotation")

Random Rotation Package Introduction PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BatchEffect, BiomedicalInformatics, DifferentialExpression, GeneExpression, Genetics, MicroRNAArray, Microarray, Normalization, Preprocessing, RNASeq, Sequencing, Software, StatisticalMethod

Version 1.4.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License GPL-3

Depends

Imports methods, graphics, utils, stats, Rdpack (>= 0.7)

System Requirements

URL https://github.com/phettegger/randRotation

Bug Reports https://github.com/phettegger/randRotation/issues

Suggests knitr, BiocParallel, lme4, nlme, rmarkdown, BiocStyle, testthat (>= 2.1.0), limma, sva

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package randRotation_1.4.0.tar.gz

Windows Binary randRotation_1.4.0.zip

macOS 10.13 (High Sierra) randRotation_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/randRotation

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/randRotation

Bioc Package Browser https://code.bioconductor.org/browse/randRotation/

Package Short Url https://bioconductor.org/packages/randRotation/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.13 Source Archive