methylCC

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see methylCC.

Estimate the cell composition of whole blood in DNA methylation samples

Bioconductor version: 3.13

A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).

Author: Stephanie C. Hicks [aut, cre] , Rafael Irizarry [aut]

Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("methylCC")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("methylCC")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylCC")

The methylCC user's guide HTML R Script

Reference Manual PDF

NEWS Text

Version 1.6.0

In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)

License CC BY 4.0

Depends R (>= 3.6), FlowSorted.Blood.450k

System Requirements

Suggests knitr, testthat (>= 2.1.0), BiocGenerics, BiocStyle, tidyr, ggplot2

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Follow Installation instructions to use this package in your R session.

Source Package methylCC_1.6.0.tar.gz

Windows Binary methylCC_1.6.0.zip

macOS 10.13 (High Sierra) methylCC_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/methylCC

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylCC

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Old Source Packages for BioC 3.13 Source Archive