intansv

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see intansv.

Integrative analysis of structural variations

Bioconductor version: 3.13

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Author: Wen Yao <ywhzau at gmail.com>

Maintainer: Wen Yao <ywhzau at gmail.com>

Citation (from within R, enter citation("intansv")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("intansv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("intansv")

An Introduction to intansv PDF R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Genetics, Sequencing, Software

Version 1.32.0

In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)

License MIT + file LICENSE

Depends R (>= 2.14.0), plyr, ggbio, GenomicRanges

Imports BiocGenerics, IRanges

System Requirements

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package intansv_1.32.0.tar.gz

Windows Binary intansv_1.32.0.zip

macOS 10.13 (High Sierra) intansv_1.32.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/intansv

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/intansv

Bioc Package Browser https://code.bioconductor.org/browse/intansv/

Package Short Url https://bioconductor.org/packages/intansv/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.13 Source Archive