illuminaio

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see illuminaio.

Parsing Illumina Microarray Output Files

Bioconductor version: 3.13

Tools for parsing Illumina's microarray output files, including IDAT.

Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("illuminaio")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("illuminaio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("illuminaio")

Description of Encrypted IDAT Format PDF

Introduction to illuminaio PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software

Version 0.34.0

In Bioconductor since BioC 2.12 (R-3.0) (11 years)

License GPL-2

Depends

Imports base64

System Requirements

URL https://github.com/HenrikBengtsson/illuminaio

Bug Reports https://github.com/HenrikBengtsson/illuminaio/issues

Suggests RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle

Linking To

Enhances

Depends On Me EGSEA123, normalize450K, RnBeads, wateRmelon

Imports Me beadarray, ChAMP, crlmm, ENmix, methylumi, minfi, sesame

Suggests Me limma

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package illuminaio_0.34.0.tar.gz

Windows Binary illuminaio_0.34.0.zip

macOS 10.13 (High Sierra) illuminaio_0.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/illuminaio

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/illuminaio

Bioc Package Browser https://code.bioconductor.org/browse/illuminaio/

Package Short Url https://bioconductor.org/packages/illuminaio/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.13 Source Archive