enrichplot

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see enrichplot.

Visualization of Functional Enrichment Result

Bioconductor version: 3.13

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre] , Erqiang Hu [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")

enrichplot HTML

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization

Version 1.12.3

In Bioconductor since BioC 3.7 (R-3.5) (6 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports cowplot, DOSE(>= 3.16.0), ggplot2, ggraph, graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, stats, utils, scatterpie, shadowtext, GOSemSim, magrittr, ggtree

System Requirements

URL https://yulab-smu.top/biomedical-knowledge-mining-book/

Bug Reports https://github.com/GuangchuangYu/enrichplot/issues

Suggests clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggnewscale, ggrepel (>= 0.9.0), ggstar, treeio, scales, tidytree

Linking To

Enhances

Depends On Me maEndToEnd

Imports Me ChIPseeker, clusterProfiler, debrowser, ExpHunterSuite, MAGeCKFlute, meshes, multiSight, ReactomePA

Suggests Me methylGSA

Links To Me

Build Report Build Report