TransView

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see TransView.

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: 3.13

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

An introduction to TransView PDF R Script

Reference Manual PDF

NEWS Text

Version 1.36.0

In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)

License GPL-3

Depends methods, GenomicRanges

Imports BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots

System Requirements GNU make

Suggests RUnit, pasillaBamSubset, BiocManager

Linking To Rhtslib(>= 1.15.3)

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Windows Binary TransView_1.36.0.zip

macOS 10.13 (High Sierra) TransView_1.36.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/TransView

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransView

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Old Source Packages for BioC 3.13 Source Archive