MSstatsConvert

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MSstatsConvert.

Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Bioconductor version: 3.13

MSstatsConvert provides tools for importing reports of Mass Spectrometry data processing tools into R format suitable for statistical analysis using the MSstats and MSstatsTMT packages.

Author: Mateusz Staniak [aut, cre], Meena Choi [aut], Ting Huang [aut], Olga Vitek [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Citation (from within R, enter citation("MSstatsConvert")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MSstatsConvert")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsConvert")

Working with MSstatsConvert HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, MassSpectrometry, Proteomics, QualityControl, Software

Version 1.2.2

In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)

License Artistic-2.0

Depends R (>= 4.0)

Imports data.table, log4r, methods, checkmate, utils, stringi

System Requirements

URL

Suggests tinytest, covr, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me MSstats, MSstatsPTM, MSstatsTMT

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsConvert_1.2.2.tar.gz

Windows Binary MSstatsConvert_1.2.2.zip

macOS 10.13 (High Sierra) MSstatsConvert_1.2.2.tgz

Source Repository git clone https://git.bioconductor.org/packages/MSstatsConvert

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsConvert

Bioc Package Browser https://code.bioconductor.org/browse/MSstatsConvert/

Package Short Url https://bioconductor.org/packages/MSstatsConvert/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.13 Source Archive