Herper
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see Herper.
The Herper package is a simple toolset to install and manage conda packages and environments from R
Bioconductor version: 3.13
Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.
Author: Matt Paul [aut] , Thomas Carroll [aut, cre] , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
citation("Herper")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Herper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Herper")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.