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GeneExpressionSignature
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see GeneExpressionSignature.
Gene Expression Signature based Similarity Metric
Bioconductor version: 3.13
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Author: Yang Cao [aut, cre], Fei Li [ctb], Lu Han [ctb]
Maintainer: Yang Cao <yiluheihei at gmail.com>
citation("GeneExpressionSignature")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneExpressionSignature")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneExpressionSignature")
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Follow Installation instructions to use this package in your R session.