ABSSeq

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see ABSSeq.

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: 3.13

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ABSSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

ABSSeq PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, Software

Version 1.46.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL (>= 3)

Depends R (>= 2.10), methods

Imports locfit, limma

System Requirements

URL

Suggests edgeR

Linking To

Enhances

Depends On Me

Imports Me metaseqR2

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABSSeq_1.46.0.tar.gz

Windows Binary ABSSeq_1.46.0.zip

macOS 10.13 (High Sierra) ABSSeq_1.46.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ABSSeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABSSeq

Bioc Package Browser https://code.bioconductor.org/browse/ABSSeq/

Package Short Url https://bioconductor.org/packages/ABSSeq/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.13 Source Archive