survcomp

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see survcomp.

Performance Assessment and Comparison for Survival Analysis

Bioconductor version: 3.12

Assessment and Comparison for Performance of Risk Prediction (Survival) Models.

Author: Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush, Samuel Branders, Zhaleh Safikhani

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>, Markus Schroeder <markus.schroeder at ucdconnect.ie>, Catharina Olsen <colsen at ulb.ac.be>

Citation (from within R, enter citation("survcomp")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("survcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survcomp")

SurvComp: a package for performance assessment and comparison for survival analysis PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, Software, Visualization

Version 1.40.0

In Bioconductor since BioC 2.8 (R-2.13) (13 years)

License Artistic-2.0

Depends survival, prodlim, R (>= 3.4)

Imports ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid, rmeta, stats, graphics

System Requirements

URL http://www.pmgenomics.ca/bhklab/

Suggests Hmisc, CPE, clinfun, xtable, Biobase, BiocManager

Linking To

Enhances

Depends On Me genefu

Imports Me GenRank, metaseqR2

Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, glmSparseNet, GSgalgoR, metaseqR

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package survcomp_1.40.0.tar.gz

Windows Binary survcomp_1.40.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) survcomp_1.40.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/survcomp

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/survcomp

Bioc Package Browser https://code.bioconductor.org/browse/survcomp/

Package Short Url https://bioconductor.org/packages/survcomp/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive