pwrEWAS

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pwrEWAS.data.

A user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

DOI: 10.18129/B9.bioc.pwrEWAS

Bioconductor version: 3.12

pwrEWAS is a user-friendly tool to assists researchers in the design and planning of EWAS to help circumvent under- and overpowered studies.

Author: Stefan Graw

Maintainer: Stefan Graw <shgraw at uams.edu>

Citation (from within R, enter citation("pwrEWAS")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("pwrEWAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pwrEWAS")

pwrEWAS User's Guide PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DNAMethylation, DifferentialMethylation, Microarray, Software, TissueMicroarray

Version 1.4.0

In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)

License Artistic-2.0

Depends shinyBS, foreach

Imports doParallel, abind, truncnorm, CpGassoc, shiny, ggplot2, parallel, shinyWidgets, BiocManager, doSNOW, limma, genefilter, stats, grDevices, methods, utils, graphics, pwrEWAS.data

System Requirements

URL

Suggests knitr, RUnit, BiocGenerics, rmarkdown

Linking To

Enhances

Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pwrEWAS_1.4.0.tar.gz

Windows Binary pwrEWAS_1.4.0.zip

macOS 10.13 (High Sierra) pwrEWAS_1.4.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/pwrEWAS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pwrEWAS

Bioc Package Browser https://code.bioconductor.org/browse/pwrEWAS/

Package Short Url https://bioconductor.org/packages/pwrEWAS/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive