netresponse

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see netresponse.

Functional Network Analysis

Bioconductor version: 3.12

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("netresponse")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")

microbiome R package HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription

Version 1.50.0

In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)

License GPL (>=2)

Depends R (>= 2.15.1), Rgraphviz, methods, minet, mclust, reshape2

Imports dmt, ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer

System Requirements

URL https://github.com/antagomir/netresponse

Bug Reports https://github.com/antagomir/netresponse/issues

Suggests knitr

Linking To

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Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netresponse_1.50.0.tar.gz

Windows Binary netresponse_1.50.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) netresponse_1.50.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/netresponse

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netresponse

Bioc Package Browser https://code.bioconductor.org/browse/netresponse/

Package Short Url https://bioconductor.org/packages/netresponse/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive