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IntramiRExploreR
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see IntramiRExploreR.
Predicting Targets for Drosophila Intragenic miRNAs
Bioconductor version: 3.12
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
Author: Surajit Bhattacharya and Daniel Cox
Maintainer: Surajit Bhattacharya <sbhattacharya3 at student.gsu.edu>
citation("IntramiRExploreR")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IntramiRExploreR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IntramiRExploreR")
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Follow Installation instructions to use this package in your R session.