This package is for version 3.12 of Bioconductor;
for the stable, up-to-date release version, see
ExperimentHub.
Client to access ExperimentHub resources
Bioconductor version: 3.12
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter citation("ExperimentHub")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentHub")
ExperimentHub: Access the ExperimentHub Web Service
HTML
R Script
Details
Version
1.16.1
In Bioconductor since
BioC 3.4 (R-3.3) (7.5 years)
License
Artistic-2.0
Imports
utils,
S4Vectors, BiocManager, curl, rappdirs
System Requirements
See More
Linking To
Depends On Me
adductomicsR,
alpineData,
benchmarkfdrData2019,
biscuiteerData,
bodymapRat,
brainImageRdata,
CellMapperData,
clustifyrdatahub,
curatedAdipoChIP,
curatedMetagenomicData,
DMRcatedata,
FlowSorted.Blood.EPIC,
FlowSorted.CordBloodCombined.450k,
HDCytoData,
HighlyReplicatedRNASeq,
HumanAffyData,
mcsurvdata,
MetaGxBreast,
MetaGxOvarian,
MetaGxPancreas,
muscData,
NanoporeRNASeq,
NestLink,
restfulSEData,
RNAmodR.Data,
SCATEData,
SeqSQC,
sesameData,
tartare,
tcgaWGBSData.hg19
Imports Me
adductData,
celldex,
chipseqDBData,
CLLmethylation,
CopyNeutralIMA,
curatedTCGAData,
depmap,
DMRcate,
DropletTestFiles,
DuoClustering2018,
ENmix,
ExperimentHubData,
FieldEffectCrc,
GSEABenchmarkeR,
HarmonizedTCGAData,
HCAData,
HMP16SData,
HMP2Data,
MethylSeqData,
MouseGastrulationData,
PhyloProfile,
PhyloProfileData,
pwrEWAS.data,
restfulSE,
scRNAseq,
signatureSearch,
signatureSearchData,
SingleCellMultiModal,
singleCellTK,
spatialLIBD,
TabulaMurisData,
TENxBrainData,
TENxBUSData,
TENxPBMCData
Suggests Me
ANF,
AnnotationHub,
bambu,
celaref,
celarefData,
CellMapper,
curatedAdipoArray,
DEqMS,
GSE62944,
HDF5Array,
missMethyl,
muscat,
recountmethylation,
tissueTreg
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Source Repository
git clone https://git.bioconductor.org/packages/ExperimentHub
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/ExperimentHub