ChIPQC
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ChIPQC.
Quality metrics for ChIPseq data
Bioconductor version: 3.12
Quality metrics for ChIPseq data.
Author: Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark
Maintainer: Tom Carroll <tc.infomatics at gmail.com>, Rory Stark <rory.stark at cruk.cam.ac.uk>
Citation (from within R, enter
citation("ChIPQC")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPQC") ChIPQCSampleReport.pdf
PDF
Reference Manual
PDF
NEWS
Text
Details
Version
1.26.0
In Bioconductor since
BioC 2.14 (R-3.1) (10 years)
License
GPL (>= 3)
Depends
R (>= 3.0.0), ggplot2, DiffBind, GenomicRanges(>= 1.17.19)
Imports
BiocGenerics(>= 0.11.3), S4Vectors(>= 0.1.0), IRanges(>= 1.99.17), Rsamtools(>= 1.17.28), GenomicAlignments(>= 1.1.16), chipseq(>= 1.12.0), gtools, BiocParallel, methods, reshape2, Nozzle.R1, Biobase, grDevices, stats, utils, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg18.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Rnorvegicus.UCSC.rn4.ensGene, TxDb.Celegans.UCSC.ce6.ensGene, TxDb.Dmelanogaster.UCSC.dm3.ensGene
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Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
ChIPQC_1.26.0.tar.gz
Windows Binary
ChIPQC_1.26.0.zip
macOS 10.13 (High Sierra)
ChIPQC_1.26.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/ChIPQC
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/ChIPQC
Bioc Package Browser
https://code.bioconductor.org/browse/ChIPQC/
Package Short Url
https://bioconductor.org/packages/ChIPQC/
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Old Source Packages for BioC 3.12
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