BiocWorkflowTools

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see BiocWorkflowTools.

Tools to aid the development of Bioconductor Workflow packages

Bioconductor version: 3.12

Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.

Author: Mike Smith [aut, cre], Andrzej Oleś [aut]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("BiocWorkflowTools")):

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BiocWorkflowTools")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocWorkflowTools")

Converting Rmarkdown to F1000Research LaTeX Format HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.16.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License MIT + file LICENSE

Depends R (>= 3.4)

Imports BiocStyle, bookdown, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis

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Follow Installation instructions to use this package in your R session.

macOS 10.13 (High Sierra) BiocWorkflowTools_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/BiocWorkflowTools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocWorkflowTools

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Old Source Packages for BioC 3.12 Source Archive