scRNAseq

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.

Collection of Public Single-Cell RNA-Seq Datasets

Bioconductor version: 3.10

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

Author: Davide Risso [aut, cre, cph], Michael Cole [aut], Aaron Lun [ctb]

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("scRNAseq")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("scRNAseq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scRNAseq")

User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Version 2.0.2

License CC0

System Requirements

URL

Suggests BiocStyle, AnnotationHub, AnnotationDbi, knitr, rmarkdown, BiocFileCache, testthat

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Depends On Me

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Follow Installation instructions to use this package in your R session.

Source Package scRNAseq_2.0.2.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan)

Source Repository git clone https://git.bioconductor.org/packages/scRNAseq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scRNAseq

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