rTRM
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see rTRM.
Identification of transcriptional regulatory modules from PPI networks
Bioconductor version: 3.10
rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.
Author: Diego Diez
Maintainer: Diego Diez <diego10ruiz at gmail.com>
Citation (from within R, enter
citation("rTRM")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rTRM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rTRM") Reference Manual
PDF
NEWS
Text
Details
Version
1.24.0
In Bioconductor since
BioC 2.13 (R-3.0) (10.5 years)
License
GPL-3
Depends
R (>= 2.10), igraph (>= 1.0)
Imports
AnnotationDbi, DBI, RSQLite
System Requirements
Bug Reports
https://github.com/ddiez/rTRM/issues
See More
Suggests
RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
rTRMui
Suggests Me
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
rTRM_1.24.0.tar.gz
Windows Binary
rTRM_1.24.0.zip
Mac OS X 10.11 (El Capitan)
rTRM_1.24.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/rTRM
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/rTRM
Bioc Package Browser
https://code.bioconductor.org/browse/rTRM/
Package Short Url
https://bioconductor.org/packages/rTRM/
Package Downloads Report
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Old Source Packages for BioC 3.10
Source Archive