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pathprint
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.
Pathway fingerprinting for analysis of gene expression arrays
Bioconductor version: 3.10
Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.
Author: Gabriel Altschuler, Sokratis Kariotis
Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>
citation("pathprint")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathprint")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathprint")
Details
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Follow Installation instructions to use this package in your R session.