flowMerge

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see flowMerge.

Cluster Merging for Flow Cytometry Data

Bioconductor version: 3.10

Merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. Note: users should have a working copy of flowClust 2.0 installed.

Author: Greg Finak <gfinak at fhcrc.org>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>

Citation (from within R, enter citation("flowMerge")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowMerge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowMerge")

Merging Mixture Components for Cell Population Identification in Flow Cytometry Data The flowMerge Package. HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, FlowCytometry, ImmunoOncology, Software

Version 2.34.0

In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)

License Artistic-2.0

Depends graph, feature, flowClust, Rgraphviz, foreach, snow

Imports rrcov, flowCore, graphics, methods, stats, utils

System Requirements

URL

Suggests knitr, rmarkdown

Linking To

Enhances doMC, multicore

Depends On Me

Imports Me CONFESS, flowType

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowMerge_2.34.0.tar.gz

Windows Binary flowMerge_2.34.0.zip

Mac OS X 10.11 (El Capitan) flowMerge_2.34.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowMerge

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowMerge

Bioc Package Browser https://code.bioconductor.org/browse/flowMerge/

Package Short Url https://bioconductor.org/packages/flowMerge/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive