biocViews

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see biocViews.

Categorized views of R package repositories

Bioconductor version: 3.10

Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages.

Author: VJ Carey <stvjc at channing.harvard.edu>, BJ Harshfield <rebjh at channing.harvard.edu>, S Falcon <sfalcon at fhcrc.org> , Sonali Arora, Lori Shepherd <lori.shepherd at roswellpark.org>

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("biocViews")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("biocViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocViews")

biocViews-CreateRepositoryHTML PDF R Script

biocViews-HOWTO PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.54.0

In Bioconductor since BioC 1.8 (R-2.3) (18 years)

License Artistic-2.0

Depends R (>= 3.6.0)

Imports Biobase, graph(>= 1.9.26), methods, RBGL(>= 1.13.5), tools, utils, XML, RCurl, RUnit, BiocManager

System Requirements

URL http://www.bioconductor.org/packages/release/BiocViews.html

Suggests BiocGenerics, knitr, commonmark

Linking To

Enhances

Depends On Me Risa

Imports Me AnnotationHubData, BiocCheck, BiocPkgTools, ExperimentHubData, monocle, RforProteomics, sigFeature

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocViews_1.54.0.tar.gz

Windows Binary biocViews_1.54.0.zip

Mac OS X 10.11 (El Capitan) biocViews_1.54.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/biocViews

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocViews

Bioc Package Browser https://code.bioconductor.org/browse/biocViews/

Package Short Url https://bioconductor.org/packages/biocViews/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.10 Source Archive